All-atom lipid database
lipid17 is a modular force field, each lipid is constructed as two acryl chains and a head group. The name of amber lipid is arranged in the format of {AcrylChain1}\_{HeadGroup}\_{AcrylChain2}.
The popular POPC lipid will have a name of PA_PC_OL, whereas Cholesterol will have a name of CHL. For the lipid where the two Acyl chains are the same such as DMPC, the name of the lipid is MY_PC_MY.
The available acryl chain and head groups are:
| Description | Residue Name | |
|---|---|---|
| Acyl chain | Lauroyl (12:0) | LAL |
| Myristoyl (14:0) | MY | |
| Palmitoyl (16:0) | PA | |
| Oleoyl (18:1 n-9) | OL | |
| Stearoyl (18:0) | ST | |
| Arachidonoyl (20:4) | AR | |
| Docosahexaenoyl (22:6) | DHA | |
| Head group | Phosphatidylcholine | PC |
| Phosphatidylethanolamine | PE | |
| Phosphatidylserine | PS | |
| Phosphatidylglycerol | PGR | |
| Phosphaditic acid | PH- | |
| Other | Cholesterol | CHL |